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Dávid Deritei

Personal

  • E-mail: deriteidavid@gmail.com, deritei_david@phd.ceu.edu
  • Profile: deriteidavid.github.io

Education

  • 2015–2020: Ph.D. in Network and Data Science, Central European University, Budapest, Hungary
    Thesis Title: Dynamical Hierarchy in Biological Regulatory Networks: Applications in Modeling the Cell Cycle
    Advisors: Prof. János Kertész and Prof. Réka Albert
  • 2012–2014: M.Sc. in Computational Physics, Babes-Bolyai University, Cluj-Napoca, Romania
    Advisor: Dr. Mária Ercsey-Ravasz
  • 2009–2012: B.Sc. in Physics, Babes-Bolyai University, Cluj-Napoca, Romania
    Advisor: Dr. Zsolt Lázár

Professional

  • 2018 Aug – 2019 Aug: Research adjunct, Pennsylvania State University, Department of Physics.
    Supervisor: Prof. Réka Albert
  • 2018 April: Visiting Scholar, Pennsylvania State University, Department of Physics.
    Supervisor: Prof. Réka Albert
  • 2016 Jul – 2016 Aug: Visiting Scholar, The College of Wooster, Biochemistry and Molecular Biology,
    Supervisor: Dr. Erzsébet Ravasz Regan
  • 2015 Mar – 2017 May: Network and Web Specialist, Akceso Advisors A.G., Basel, Switzerland
  • 2015 Mar: Visiting Scholar, Beth Israel Deaconess Medical Center, Harvard Medical School
    Supervisors: Dr. Erzsébet Ravasz Regan, Prof. William C. Aird
  • 2013 Oct – 2013 Nov: Visiting Scholar, Beth Israel Deaconess Medical Center, Harvard Medical School
    Supervisors: Dr. Erzsébet Ravasz Regan
  • 2012 Sept–2015 Sept: Research Assistant, Babes-Bolyai University, Faculty of Physics, Grant of the Romanian National Authority for Scientific Research, CNDI–UEFISCDI, project number PNII-PT-PCCA-2011-3.2-0895.
    Supervisor: Dr. Mária Ercsey-Ravasz

Publications

    Journals

  • Deritei, D., Rozum, J., Regan, E. R., & Albert, R. (2019). A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint. Scientific Reports, 9(1), 1-19.
  • Sizek, H., Hamel, A., Deritei, D., Campbell, S., & Regan, E. R. (2019). Boolean model of growth signaling, cell cycle and apoptosis predicts the molecular mechanism of aberrant cell cycle progression driven by hyperactive PI3K. PLoS computational biology, 15(3), e1006402.
  • Deritei, D., Aird, W. C., Ercsey-Ravasz, M., & Regan, E. R. (2016). Principles of dynamical modularity in biological regulatory networks. Scientific reports, 6, 21957.
  • Varga, L., Deritei, D., Ercsey-Ravasz, M., Florian, R., Lázár, Z. I., Papp, I., & Járai-Szabó, F. (2018). Normalizing Scientometric Indicators of Individual Publications Using Local Cluster Detection Methods on Citation Networks. International Journal of Educational and Pedagogical Sciences, 12(9), 1189-1198.
  • Lázár, Z. I., Papp, I., Varga, L., Járai-Szabó, F., Deritei, D., & Ercsey-Ravasz, M. (2017). Stochastic graph Voronoi tessellation reveals community structure. Physical Review E, 95(2), 022306.
  • Deritei, D. Lázár, Z. I., Papp, I., Járai-Szabó, F., Sumi, R., Varga, L.,& Ercsey-Ravasz, M. (2014). Community detection by graph Voronoi diagrams. New Journal of Physics, 16(6), 063007.
  • Conference Proceedings

  • Orozco, L. G. N., Deritei, D., Vancso, A., & Vasarhelyi, O. (2019, December). Quantifying Life Quality as Walkability on Urban Networks: The Case of Budapest. In International Conference on Complex Networks and Their Applications (pp. 905-918). Springer, Cham.
  • P. Papp, M. Ercsey-Ravasz, Deritei, D., R. Sumi, F. Jarai-Szabo, R.V. Florian, A.I. Cabuz, Zs.I. Lazar, “The P-index: Hirsch index of individual publications” Proc. of the International Sociey of Scientometrics and Informetrics Conference, ISSI2013, 2086-2088, Vienna, Austria, July 2013
  • Posters

  • Deritei, D., Rozum, J., Regan, E. R., & Albert, R. ”A feedback loop of conditionally stable circuit drives the cell cycle from checkpoint to checkpoint”. Cellular Dynamics & Models meeting 2019, Cold Spring Harbor, NY
  • L. Varga, F. Jarai-Szabo, Deritei, D., Zs.I. Lazar, I. Papp, M. Ercsey-Ravasz, R. Florian, “Normalized cross-disciplinary article impact evaluation”, Global TechMining Conference, GTM2014, Leiden, Netherlands, 2014
  • I. Papp, M. Ercsey-Ravasz, Deritei, D., R. Sumi, F. JaraiSzabo, R.V. Florian, A.I. Cabuz, Zs.I. Lazar ”PH-index, Hirsh index for individual publications”, 14th International Society of Scientometrics and Infometrics Conference, Vienna 15th-19th July 2013

Contributed Talks

  • Deritei, D., Rozum, J., Regan, E. R., & Albert, R. ”A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint”. NetSci 2019, Burlington, VT
  • Deritei, D., W. C. Aird, M. Ercsey-Ravasz, & E. R. Regan ”Principles of dynamical modularity in biological regulatory networks”, NetSciX 2017, Tel Aviv
  • Deritei, D., Zs. Lazar, I. Papp, F. Jarai Szabo,R. Sumi, E. Ravasz Regan, M. Ercsey-Ravasz ”Community detection in networks by graph Voronoi diagrams”, NetSci 2013, Copenhagen
  • Zs. Lázár, Deritei, D.: ”Local and Global Criticality Conditions In Highly Modular Random Boolean Networks”, NetSci 2013, Copenhagen

Teaching Assistant

  • 2018: Statistical Methods in Network Science and Data Analysis. Central European University, Center for Network Science, Professor: Dr. Michael Széll
  • 2017: Data Mining and Big Data Analytics. Central European University, Center for Network Science, Professor: Dr. Roberta Sinatra
  • 2015: Introduction to Thermodynamics (in Hungarian), Babes-Bolyai University, Faculty of Physics, Professor: Dr. Néda Árpád

Teaching Assistant

  • Python: Advanced; 8+ years of experience. Often used libraries: numpy, matplotlib, scipy, pandas, networkx, scikit-learn, web2py, BooleanNet, etc.
  • Java: Intermediate; 2+ years of experience, mostly writing simulations on networks
  • C: Basic; 1 year of experience, mostly writing simulations of molecular dynamics
  • JavaScript: Basic; less than 1 year of experience of basic web development
  • Other technologies: OS: Linux, OSX, Windows; Databases: MySQL, SQLite; Web development: HTML, CSS, Web2Py; Version Control: Git, GitHub; Web scraping: selenium, beautifulsoup; Text editing: LateX, MS Office, LibreOffice

Selected Honours and Awards

  • 2015: Pro Scientia Gold Medal of the Hungarian National Scientific Student Council for ”Remarkable scientific work during undergraduate studies”
  • 2012-2016: 11 different awards and scholarships won in local and international competitions (OTDK, ETDK, UBB Research Scholarship, etc.)
Dávid Deritei
Published by the LINK-Group | Editor: Péter Csermely | Last updated on 10 09 2013
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